Year 12

AQA A level Chemistry Intro to Organic Chemistry Notes

Introduction to Organic Chemistry

— Chemistry · AS Level (7405) · Crash Course —
★ Exam Tip: Sir says organic chemistry makes up roughly 50%+ of the whole paper. Most of it is learning (lots of reactions) + mechanisms + “give the logical conclusion” questions — so keep an open mind and get this first chapter rock solid: naming, drawing formulae, isomers, chiral centres are used in every later chapter.

1. What is an Organic Compound?

Organic chemistry = study of organic compounds.

Definition: Organic compounds = all compounds containing carbon EXCEPT

  1. oxides of carbon — CO and CO₂
  2. carbonates & hydrogencarbonate ions — CO₃²⁻ , HCO₃⁻
  3. carbonic acid, H₂CO₃
  4. hydrogen cyanide (HCN) and the cyanide ion CN⁻
Sir’s note: the excluded ones all just have oxygen stuck on (or are CN). Diamond & graphite are also not organic! Not something to cram — just understand why.

Long ago people believed organic compounds could only be made by living things (humans, plants, insects…). Then chemists made them in the lab — so the name stayed but the idea changed.

2. Functional Groups

Definition: An atom or group of atoms that replaces hydrogen in an organic compound, defines the structure of a family and determines its chemical reactions.

Every functional group ⇒ its own “branch” = a whole set of reactions. That is why we study them one by one in AS.

# Family Functional group # Family Functional group
1 Halogenoalkane –X (X = Cl, Br, I) 7 Carboxylic acid –COOH (C(=O)–O–H)
2 Primary alcohol R–CH₂–OH 8 Ester –COO– (C(=O)–O–)
3 Secondary alcohol R–CH(R′)–OH 9 Acyl chloride –COCl (C(=O)–Cl)
4 Tertiary alcohol R–C(R′)(R″)–OH 10 Amide –CONH₂ (C(=O)–NH₂)
5 Aldehyde –CHO (C(=O)–H) 11 Nitrile –C≡N
6 Ketone –C(=O)– (C=O between two C)
Note: sir: “nothing to memorise from this page today” — it is a preview. Each group gets its own chapter later. The 1°/2°/3° alcohol = how many carbons are attached to the C bearing the –OH.

3. Homologous Series

Definition: A family of organic compounds with the same general formula; successive members differ by CH₂. They have similar chemical properties.

Alkanes CnH2n+2
Alkenes CnH2n
Alcohols CnH2n+1OH
Carboxylic acids CnH2n+1COOH
Note: This mattered more at. At A level these should come naturally — don’t keep reciting CnH2n+2.

4. Naming Organic Compounds

① Prefixes & alkyl groups

C Alkane Formula Alkyl Formula
1 methane CH₄ methyl CH₃
2 ethane C₂H₆ ethyl C₂H₅
3 propane C₃H₈ propyl C₃H₇
4 butane C₄H₁₀ butyl C₄H₉
5 pentane C₅H₁₂ pentyl C₅H₁₁
6 hexane C₆H₁₄ hexyl C₆H₁₃
7 heptane C₇H₁₆ heptyl C₇H₁₅
8 octane C₈H₁₈ octyl C₈H₁₇
9 nonane C₉H₂₀ nonyl C₉H₁₉
10 decane C₁₀H₂₂ decyl C₁₀H₂₁

Alkane = only C and H, every C has 4 single bonds ⇒ saturated. Alkyl group = alkane minus one H (methane → methyl, ethane → ethyl …).

Memory: meth (1) · eth (2) · prop (3) · but (4) · pent (5) · hex (6) · hept (7) · oct (8) · non (9) · dec (10)

② The 5 naming rules

  1. Choose the longest chain (pick the straightest one — easier to see).
  2. Number from the end where a branch / functional group gets the lowest number.
  3. Numbers separated by commas (2,2,3); numbers and words separated by hyphens (3-ethyl-2-methylpentane).
  4. Same group repeated ⇒ di, tri …
  5. Different groups ⇒ quote in alphabetical order (ethyl before methyl — e before m; “di/tri” are ignored for ordering).
Common mistake: missing hyphens/commas, e.g. “3,ethyl…” or “3ethyl…” ⇒ name is wrong. Sir: it is only a convention, butexaminers insist on it — so write it exactly.
Trap: the longest chain is not always the one drawn in a straight line, and the drawing may bend. Count carefully; if two chains are equally long, number so the branches get the lowest numbers.

③ Practice from the board (all alkanes — every C has 4 bonds)

# Structure (condensed) Thinking Name
1 CH₃CH₂CH₂CH(CH₃)CH₃ longest = 5 C; number from the CH₃ end so the branch gets 2 (not 4) 2-methylpentane
2 CH₃C(CH₃)₂CH(CH₃)CH₂CH₃ 5 C chain; number from left: branches on 2, 2, 3 ⇒ all methyl ⇒ tri 2,2,3-trimethylpentane
3 CH₃CH(CH₃)CH₂CH₃ the “CH₂CH₃” arm is part of the chain: 4 C, not a 2-C branch 2-methylbutane
4 CH₃CH(CH₃)CH(C₂H₅)CH₂CH₃ 5 C chain; methyl on 2, ethyl on 3 ⇒ ethyl first (alphabet) 3-ethyl-2-methylpentane
6 CH₃CH₂C(CH₃)(C₂H₅)CH₂CH₂CH₂CH₃ 7 C chain; both groups on C3 ⇒ 3-ethyl, 3-methyl 3-ethyl-3-methylheptane
7 CH₃CH₂CH(C₂H₅)CH₂CH(C₂H₅)CH₂CH₃ 7 C chain; both branches ethyl ⇒ “di”, numbers 3,5 (either end gives same) 3,5-diethylheptane
8 CH₃CH(CH₃)CH₂CH(CH₃)CH₂CH(CH₃)CH₂CH₃ 8 C chain; methyls on 2, 4, 6 2,4,6-trimethyloctane
9 CH₃CH(C₂H₅)CH₂CH(C₂H₅)CH₂CH(C₂H₅)CH₂CH₃ 8 C chain; ethyls on 2, 4, 6 2,4,6-triethyloctane
Board note: question 5 on the board’s numbering row was skipped between 4 and 6 — the nine printed compounds run 1–4 (left) and 6–9 (right), so eight named structures are shown above.

5. Types of Organic Formula

Formula What it shows e.g. ethanol
Molecular just the atoms & their numbers — no structure information C₂H₆O
Structural the order in which atoms are bonded to each other CH₃CH₂OH
Displayed ALL atoms and ALL bonds drawn out H–C(H)(H)–C(H)(H)–O–H
Skeletal carbon chain as a zig-zag; C and H (on C) removed; functional groups shown zig-zag with OH
OHethanol
2-methylbutane
Sir’s rules for displayed formula: when the examiner says “displayed” — open every bond, including every C–H and the O–H. Writing “CH₃” inside a displayed formula loses the mark. The bond must go to the correct atom (a dash touching the H of O–H shows H is bonded to O; a dash to the wrong atom is wrong).
P1 trick: in MCQs, don’t draw displayed formulae — use skeletal / structural. Skip drawing hydrogens; it just wastes time.

Structural formula is the most useful: it lets you see isomerism — e.g. but-1-ene CH₂=CHCH₂CH₃ and but-2-ene CH₃CH=CHCH₃ have the same molecular formula but different structure.

Skeletal conventions: each line-end / corner is a carbon; hydrogens on carbon not drawn; heteroatoms (O, Cl, Br, N) and –OH written out; double bond = double line.

Board practice — draw structural, displayed and skeletal formula for:

# Name Structural formula
1 2-methylbutane CH₃CH(CH₃)CH₂CH₃
2 3,5-diethylheptane CH₃CH₂CH(C₂H₅)CH₂CH(C₂H₅)CH₂CH₃
3 2,4,6-trimethyloctane CH₃CH(CH₃)CH₂CH(CH₃)CH₂CH(CH₃)CH₂CH₃
4 3-ethyl-3-methylheptane CH₃CH₂C(CH₃)(C₂H₅)CH₂CH₂CH₂CH₃
5 but-1-ene CH₂=CHCH₂CH₃
6 but-2-ene CH₃CH=CHCH₃
7 propan-1-ol CH₃CH₂CH₂OH
8 propan-2-ol CH₃CH(OH)CH₃
9 2,2,4-trimethylpentane CH₃C(CH₃)₂CH₂CH(CH₃)CH₃
but-1-ene
but-2-ene
OHpropan-1-ol

Skeletal of propan-2-ol: zig-zag of 3 C with OH on the middle carbon; 2,2,4-trimethylpentane: 5-C chain with two methyl spikes on C2 and one on C4 (see figure).

6. Isomerism

Definition: Isomers = compounds with the same molecular formula but different arrangement of atoms.

IsomerismStructuralStereochainpositionfunctional groupopticalgeometricbranchinggroup movesgroup changeschiral CC=C, cis/trans
Structural = same molecular formula, different structural formula · Stereo = same structural formula, atoms arranged differently in 3-D space

Structural isomerism — three types

Type Cause Board example
Chain branching of the carbon chain (alkyl groups) butane CH₃CH₂CH₂CH₃ vs 2-methylpropane CH₃CH(CH₃)CH₃
Position position of the functional group changes 1-bromopropane vs 2-bromopropane
Functional group a different functional group altogether propanal CH₃CH₂CHO vs propanone CH₃COCH₃
Sir: examiner does not normally ask “which kind of isomerism” — but worth having in the back of your head.

Q. Draw the isomers of butanol (C₄H₉OH)

board · butanol4 structural isomers

Method: keep 4 C chain and move OH (position) ⇒ then branch the chain (chain isomerism) ⇒ then move OH again.

① CH₃CH₂CH₂CH₂OH → butan-1-ol② CH₃CH(OH)CH₂CH₃ → butan-2-ol③ CH₃CH(CH₃)CH₂OH → 2-methylpropan-1-ol④ (CH₃)₃C–OH → 2-methylpropan-2-ol

OH group must get the lowest number — numbering starts from the OH end. “Butanol is an important compound — learn its 4 isomers; it is the usual examiner’s favourite (but-…).”

CCCCOH1-olOH2-ol
slide OH along the chain first (position isomers)

Fast method for counting isomers in P1 (C₃H₅Cl₃ = trichloropropane)

MCQ 20 · C₃H₅Cl₃How many structural isomers?

Don’t draw H. Draw the carbon skeleton C–C–C and place the Cl’s. Start with all three on one carbon, then move one by one, then two by two.

all 3 Cl on C1 → CCl₃CH₂CH₃ ①move one Cl: CHCl₂–CHCl–CH₃ ②CHCl₂–CH₂–CH₂Cl ③2 Cl on C2, 1 on C1: CH₂Cl–CCl₂–CH₃ ④one Cl on each C: CH₂Cl–CHCl–CH₂Cl ⑤CH₂Cl–CH₂–CHCl₂ = ③ read backwards ✗ duplicatea 3rd move gives nothing newtotal = 5
A 3 ✗B 4 ✗C 5 ✓D 6 ✗

Answer: C

Sir’s hacks: ① don’t draw hydrogens; ② put all substituents on one C, then move them one at a time (1-by-1, then 2-by-2, then 3-by-3); ③ do position isomers first, then chain isomers; ④ in these “how many isomers” MCQs the answer is usually the largest or 2nd-largest option (~80–85% of the time — “usually”, not always). Just a speed-up; still count properly.
MCQ 8 · chloroethanesC₂H₆₋ₙClₙ, n = 1 to 4
n=1 C₂H₅Cl → 1 isomern=2 C₂H₄Cl₂ → 2 (1,1- and 1,2-)n=3 C₂H₃Cl₃ → 2 (1,1,1- and 1,1,2-)n=4 C₂H₂Cl₄ → 2 (1,1,1,2- and 1,1,2,2-)

1 + 2 + 2 + 2 = 7

Answer: C (7)

Skeletal formula MCQs (board)

Q Question Working / answer
30 skeletal of 2-chloropentan-3-ol 5-C chain; Cl on C2, OH on C3 ⇒ A ✓; C, D have wrong chain length/positions
34 skeletal of 2-methylpentan-1-ol OH on C1 end, methyl on C2 ⇒ C ✓
38 skeletal of 2-bromopentan-4-ol (properly 4-bromopentan-2-ol: OH gets lowest number) 5-C chain, Br and OH on C2/C4 ⇒ A ✓
40 three structural isomers of C₅H₁₂ — which formulae correctly represent them? pentane CH₃CH₂CH₂CH₂CH₃; 2-methylbutane CH₃CH(CH₃)CH₂CH₃ (= CH₃CH(CH₃)CH₂CH₃); 2,2-dimethylpropane C(CH₃)₄ = CH₃C(CH₃)₂CH₃ ⇒ C ✓
53 jet fuel Q = C₁₄H₃₀; which skeletal is a structural isomer of Q? need same molecular formula but different structure: B is C₁₃H₂₈ ✗; A and D crossed on board; C ✓ (C₁₄H₃₀)

7. Stereoisomerism

Definition: Same structural formula, but atoms arranged differently in 3-D space. Two kinds: optical and geometric (cis–trans).

A. Optical isomerism

  • Arises when a carbon is bonded to 4 different atoms/groups ⇒ a chiral centre (mark with *).
  • The two isomers are non-superimposable mirror images of each other.
  • They rotate plane-polarised light in opposite directions.
BrHFCl*BrHFCl*mirror
CHBrClF — 4 different groups on C* ⇒ mirror images can’t be superimposed (wedge = towards you, dashes = away)
Board examples:
① CHBrClF (above) ② 2-hydroxypropanoic acid CH₃–C*H(OH)–COOH — chiral C has H, OH, CH₃, COOH. To draw the optical isomer: keep the chiral C, draw a mirror line, reflect all four groups.
★ Exam Tip: A carbon that has a double bond, or is CH₂ or CH₃, can never be chiral (board). Sir adds: ring-type carbons like benzene rings can be crossed out too.
Board note (corrected): the board says “a compound with n chiral centres usually has 2ⁿ chiral centres (not always!)”. Correct wording: it usually has 2ⁿ optical isomers (stereoisomers) — not always, e.g. when the molecule is symmetrical (meso).

Sir’s fast method to count chiral centres

cross out CH₃, CH₂,C=C carbons, ringscross out C with twoidentical groupscheck the rest:4 different chains?
Common mistake: looking only at the immediate neighbours. Two “CH₂” arms may look the same but lead to different chains further along (e.g. one goes to C=O, the other to CH₂–CH₂). Follow each arm until it differs. Mark each chiral C with a small *.
MCQ 1 · camphorhow many chiral centres?

Cross out CH₃, CH₂ and C=O carbons and the C with 2 CH₃ ⇒ only the two bridgehead carbons remain; each has 4 different chains (one arm leads to C=O, the other to CH₂–CH₂).

Answer: C (2)

MCQ 4 · warfarinhow many chiral centres?

Cross out all ring carbons (benzene, lactone ring), C=O, CH₃, CH₂ ⇒ only one CH left (bonded to H, phenyl ring, ring carbon, CH₂COCH₃) — a chiral centre. “2 minutes and done.”

Answer: B (1)

MCQ 6which molecule has NO chiral centre?

A, B, C each contain a carbon with 4 different groups. In D the central C carries two identical hydroxyphenyl groups ⇒ not chiral.

Answer: D

MCQ 10 · vitamin Cchiral centres in one molecule

Cross out C=C, C=O, CH₂ ⇒ two CH carbons left (ring C–H(–O) and side-chain CH(OH)), each with 4 different groups.

Answer: B (2)

MCQ 43 · artemisininchiral centres in each molecule

Same method: CH₃, CH₂ and C=O carbons crossed out; the remaining bridgehead/ring carbons bonded to 4 different groups are marked *. Board count = 7.

Answer: C (7)

B. Geometric (cis–trans) isomerism

  • Arises because the C=C π bond prevents rotation about the double bond.
  • Two different groups must be attached to EACH carbon of the C=C.
  • cis = the two chosen groups on the same side; trans = on opposite sides.
  • A molecule with n such C=C bonds (different groups on each carbon) has 2ⁿ geometric isomers.
H₃CHCH₃H
cis-but-2-ene (CH₃ same side)
H₃CHHCH₃
trans-but-2-ene (CH₃ opposite)
Board example 2: 1,2-dibromoethene
cis (both Br on the same side) and trans (Br opposite). Board slip: captions there read “cis/trans but-2-ene” — it should be cis/trans-1,2-dibromoethene. If two groups are different (e.g. 1-bromo-2-chloroethene), pick H as the reference: H’s same side = cis.
Trap: Not every C=C shows cis–trans. If either C=C carbon carries two identical groups (H,H or CH₃,CH₃ or C₂H₅,C₂H₅), flipping gives the same molecule ⇒ no cis–trans. Examiners rarely ask “which is cis”, but do ask “does it have cis–trans?”.

Past-paper questions — stereo & counting

Q Question Working / answer
3 structural + cis-trans isomers of dichloropropene C₃H₄Cl₂ ① CH₂=CH–CHCl₂ ✗ ② CH₂=CCl–CH₂Cl ✗ ③ CHCl=CH–CH₂Cl ✓ (cis+trans) ④ CHCl=CCl–CH₃ ✓ (cis+trans) ⑤ CCl₂=CH–CH₃ ✗ ⇒ 1+1+2+2+1 = 7 ⇒ D
5 alcohols C₄H₁₀O incl. stereoisomers butan-1-ol, butan-2-ol (has chiral C* ⇒ 2 optical isomers), 2-methylpropan-1-ol, 2-methylpropan-2-ol ⇒ 1+2+1+1 = 5 ⇒ C
11 which alkene has cis and trans forms need two different groups on each C=C carbon: CH₃CH₂CH₂CH=CHCH₃ ⇒ B ✓; A (=CH₂), C (=CH₂ end) and D (CH₃/CH₃ on one carbon) ✗
26 CH₃CH=CRCH₂CH₃ has no cis-trans. What is R? The right carbon already has CH₂CH₃; if R = C₂H₅ both groups on that carbon are identical ⇒ no cis-trans ⇒ D (C₂H₅)
32 compound showing both cis-trans and optical isomerism needs a C=C with two different groups on each C and a chiral C — board circles B (A and D ✗; C is also ticked on the board — check against the mark scheme)
39 isomers of C₂H₂Br₂ incl. stereo ① CH₂=CBr₂ ② CHBr=CHBr → cis + trans ⇒ 1 + 2 = 3 ⇒ B

8. Counting σ and π bonds

Every single bond = 1σ · every double bond = 1σ + 1π · every triple = 1σ + 2π. C–H bonds are σ too — count them all!

MCQ 22how many σ bonds?

CH₂=CH–CH₂–C(=O)–O–CH₂–CH=CH₂. Board labels each bond σ / π: the 3 C=C/C=O double bonds contribute 3π (and 3σ) ⇒ total σ = 18.

Answer: C (18)

✓ Quick Recap — Intro to Organic
  • Organic = carbon compounds except CO, CO₂, carbonates/HCO₃⁻, H₂CO₃, HCN/CN⁻.
  • Functional group = atom/group replacing H that decides reactions; homologous series differ by CH₂.
  • Naming: longest chain → lowest numbers → commas between numbers, hyphens number–word → di/tri → alphabetical (ethyl before methyl).
  • Formulae: molecular (atoms) · structural (bonding order) · displayed (all bonds) · skeletal (zig-zag; show functional groups).
  • Isomers: same molecular formula. Structural = chain / position / functional group. Stereo = optical + geometric.
  • Optical: chiral C* with 4 different groups; non-superimposable mirror images; rotate plane-polarised light oppositely. CH₃, CH₂, C=C carbons, rings can’t be chiral.
  • Geometric: C=C (no rotation) + two different groups on each carbon; cis = same side, trans = opposite; n C=C ⇒ 2ⁿ.
  • Counting isomers fast: no H, group all substituents first, move one-by-one; position first, then chain.